Detailed view for TGME49_322200

Basic information

TDR Targets ID: 835477
Toxoplasma gondii, apocytochrome b, putative
Source Database / ID:  ToxoDB 

pI: 8.2769 | Length (AA): 84 | MW (Da): 9522 | Paralog Number: 2

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 2

Druggability Group : DG1

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00032   Cytochrome b(C-terminal)/b6/petD

Gene Ontology

Mouse over links to read term descriptions.
GO:0016020   membrane  
GO:0016491   oxidoreductase activity  
GO:0009055   electron carrier activity  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 4 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
1 203 5b1a (A) 288 481 44.00 0 0.94 0.986322 -0.07
1 178 3hb3 (A) 323 491 45.00 0 0.91 0.885687 0.39
1 82 2a06 (C) 217 298 38.00 0 0.29 1.16309 2.13
5 81 3tgu (C) 224 298 45.00 0.000000000006 0.67 1.10797 2.36

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

Upregulation Percent Ranking Stage Dataset
NA% percentile VEG Tachyzoite, ME49 Tachyzoite, ME49 merozoite, ME49 Oocyst, ME49 Bradyzoite. Gregory Hehl AB Fritz HM Sibley/Greg
Show/Hide expression data references
  • Sibley/Greg ToxoDB
  • Hehl AB Asexual expansion of Toxoplasma gondii merozoites is distinct from tachyzoites and entails expression of non-overlapping gene families to attach, invade, and replicate within feline enterocytes.
  • Gregory ToxoDB
  • Fritz HM Transcriptomic analysis of toxoplasma development reveals many novel functions and structures specific to sporozoites and oocysts.

Orthologs

Ortholog group members (OG5_128504)

Species Accession Gene Product
Arabidopsis thaliana AT2G07727   cytochrome b
Arabidopsis thaliana ArthMp020   apocytochrome B
Arabidopsis thaliana ArthCp053   cytochrome b6
Babesia bovis BBOV_VI000060   cytochrome b
Dictyostelium discoideum DidioMp12   cytochrome b
Echinococcus granulosus EgrG_900000100   cytochrome B
Homo sapiens 4519   cytochrome b
Mycobacterium leprae ML0879c   Probable Ubiquinol-cytochrome C reductase QcrB (cytochrome B subunit)
Mus musculus 17711   cytochrome b
Mycobacterium tuberculosis Rv2196   Probable ubiquinol-cytochrome C reductase QcrB (cytochrome B subunit)
Mycobacterium ulcerans MUL_3553   ubiquinol-cytochrome C reductase QcrB
Oryza sativa 6450178   apocytochrome b
Oryza sativa 3131403   cytochrome b6
Onchocerca volvulus OVOC10402  
Plasmodium berghei PBANKA_MIT01900   cytochrome b
Plasmodium falciparum mal_mito_3   cytochrome b
Plasmodium knowlesi PKNH_MIT01900   cytochrome b
Plasmodium vivax PVAD80_MIT0003   cytochrome b
Plasmodium yoelii PY00780   Cytochrome b, putative
Plasmodium yoelii PY00774   Cytochrome b, putative
Plasmodium yoelii PY00148   Cytochrome b, putative
Saccharomyces cerevisiae Q0105   cytochrome b
Saccharomyces cerevisiae Q0120   intron-encoded RNA maturase bI4
Schistosoma japonicum Sjp_0314560   ko:K00412 ubiquinol-cytochrome c reductase cytochrome b subunit, putative
Schistosoma mansoni Smp_190460   cytochrome b
Schmidtea mediterranea mk4.075142.00  
Toxoplasma gondii TGME49_322210   apocytochrome b, putative
Toxoplasma gondii TGME49_322200   apocytochrome b, putative
Toxoplasma gondii TGME49_330000   cytochrome b
Theileria parva Tpmp3   cytochrome b
Wolbachia endosymbiont of Brugia malayi Wbm0775   cytochrome b subunit of the bc complex

Essentiality

TGME49_322200 has direct evidence of essentiality
Gene/Ortholog Organism Phenotype Source Study
mtu2230 Mycobacterium tuberculosis essential nmpdr
TGME49_330000 Toxoplasma gondii Essentiality uncertain sidik
TGME49_322200 this record Toxoplasma gondii Essentiality uncertain sidik
TGME49_322210 Toxoplasma gondii Essentiality uncertain sidik
Show/Hide essentiality data references
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Species Known druggable target Linked compounds Reference
Sus scrofa Cytochrome b Compounds References
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model

Ranking Plot

Putative Drugs List

Compound Raw Global Species
0.0381 0.5 0.5
0.0843 0.269 1
0.0437 0.2695 1
0.0572 0.5 0.5
0.0709 0.5 0.5
0.0076 1 0.5
0.0254 1 1
0.0316 0.3153 0.5
0.0517 1 0.5
0.0462 1 0.5
0.0437 0.2742 1
0.0848 0.8651 1
0.0953 1 1
0.0135 0.6859 1
0.1645 0.5 0.5
0.0575 0.5 0.5
0.0439 0.2782 1
0.0128 0.2617 1
0.0511 0.263 1
0.0953 1 1
0.1486 0.6683 0.6677
0.0843 0.269 1
0.0194 1 0.5
0.0333 1 0.5
0.0502 0.2775 1
0.0843 0.269 1
0.0843 0.269 1
0.0401 0.2851 1
0.0062 0.3337 1
0.0323 0.4186 1
0.0061 0.313 1
0.0073 0.3972 0.5
0.0076 0.4755 1
0.1565 1 1
0.0076 0.4755 1
0.0945 0.3127 0.3125
0.0326 1 0.5
0.0437 0.2742 1
0.0848 0.8651 1
0.0918 1 1
0.0069 0.3005 0.5
0.0401 0.2851 1
0.0511 0.263 1
0.0375 0.438 0.5
0.0128 0.2617 1
0.0312 0.3861 1
0.0254 1 1
0.0066 1 0.5
0.0421 0.2661 1
0.0373 0.4951 1
0.0574 1 0.5
0.0443 0.2682 1
0.0127 1 0.5
0.0326 1 0.5
0.0123 1 1
0.0843 0.269 1
0.2068 0.6185 1
0.0427 0.2686 1
0.0386 1 0.5
0.0422 0.2642 1
0.0076 0.2711 1
0.0499 0.2574 1
0.046 0.2601 1
0.0634 1 0.5
0.0459 0.2714 1
0.0135 1 1
0.0605 1 0.5
0.0846 1 1
0.1933 0.2959 1
0.0193 0.4029 0.5
0.0139 0.4206 0.5
0.0128 0.2617 1
0.1797 0.2842 1
0.0123 1 0.5
0.0843 0.269 1
0.0379 0.3805 0.5
0.0572 1 0.5
0.0256 1 1
0.0319 0.3115 0.5
0.0341 0.2603 1
0.0945 0.3127 0.3125
0.0505 1 1
0.0128 1 1
0.0128 0.2617 1
0.0064 0.2919 1
0.0843 0.269 1
0.0843 0.269 1
0.0203 1 1
0.0076 0.5 0.5
0.1001 1 1
0.0911 0.5 0.5
0.0575 0.5 0.5
0.0257 1 0.5
0.0123 1 1
0.0451 1 0.5
0.0312 0.3861 1
0.0576 0.5 0.5
0.0521 0.5 0.5
0.0522 0.2518 1
0.0076 1 0.5
0.0511 0.263 1
0.0511 1 1

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

No user comments are available for this gene. Log in to add comments, or register.

Enter your comment

User ()
Gene identifier TGME49_322200 (Toxoplasma gondii), apocytochrome b, putative
Title for this comment
Comment